CRESCYNT Toolbox – Workflows as Collaboration Space and Workbench Blueprint

puzzle-juggling_pixabayScientists need better ways to analyze and integrate their data and collaborate with other scientists; new computing technologies and tools can help with this. However, it’s difficult to overcome the challenge of disparate perspectives and the absence of a common vocabulary: this is true of multidisciplinary science teams, and true when scientists try to talk with computer scientists. Workflows, as a way to help design and implement a workbench, are needed both as a collaboration space and a blueprint for implementation.

Take a look at a recent presentation to the EarthCube science committee (video) or an earlier presentation offered at ASLO 2017 (slides and voice) to see a flexible and low-tech way to simultaneously (1) facilitate necessary sci-tech interactions for your own lab and (2) begin to sketch out a blueprint for work that needs to be done. Subsequent technical implementation is possible with new tools including Common Workflow Language (CWL) as a set of specifications, Dockers as modular and sharable containers for either fully developed tools or small pieces of code, and Nextflow as an efficient and highly scalable definitive software language to make the computational work happen. Look for a post in the near future by Mahdi Belcaid to describe the technical implementation of these workflows.

OPPORTUNITY! We will be hosting one or two in-person skills training workshops in the coming months, with your expenses covered by our NSF EarthCube CRESCYNT grant, focused particularly on training early career professionals, and will work through some challenging coral reef use cases and their cyberinfrastructure needs. We collected some great use cases at ICRS, but would like additional cases to consider, so we invite you to describe your own research challenges through this google form. Please contact us for more on this, or other issues. Thanks!

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CRESCYNT Toolbox – Workflows as Collaboration Space and Workbench Blueprint

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